OBO Foundry dashboard analysis¶

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/tmp/ipykernel_892/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    9
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 9 81710.333333 127484.339009 1195.0 8675.0 11393.0 112828.0 375707.0
Declaration 9 10419.555556 11064.712266 300.0 2047.0 5628.0 18821.0 32165.0
EquivalentClasses 8 2817.666667 3492.448282 0.0 23.0 627.0 6196.0 7863.0
SubClassOf 8 12764.444444 17216.936996 0.0 407.0 4270.0 21193.0 46685.0
SubAnnotationPropertyOf 6 8.888889 13.896442 0.0 0.0 3.0 8.0 38.0
SubPropertyChainOf 5 11.555556 19.679374 0.0 0.0 1.0 12.0 59.0
SymmetricObjectProperty 4 1.111111 1.452966 0.0 0.0 0.0 3.0 3.0
SubObjectPropertyOf 4 30.777778 49.949419 0.0 0.0 0.0 50.0 135.0
DisjointClasses 4 10.666667 25.416530 0.0 0.0 0.0 6.0 78.0
TransitiveObjectProperty 3 2.555556 5.077182 0.0 0.0 0.0 2.0 15.0
ObjectPropertyRange 3 7.000000 11.757976 0.0 0.0 0.0 9.0 29.0
ObjectPropertyDomain 3 8.666667 13.490738 0.0 0.0 0.0 18.0 32.0
InverseObjectProperties 3 6.111111 9.930313 0.0 0.0 0.0 10.0 25.0
DataPropertyRange 2 0.666667 1.322876 0.0 0.0 0.0 0.0 3.0
DataPropertyDomain 2 1.333333 3.316625 0.0 0.0 0.0 0.0 10.0
ClassAssertion 2 2.555556 6.948221 0.0 0.0 0.0 0.0 21.0
AnnotationPropertyRangeOf 2 0.444444 0.881917 0.0 0.0 0.0 0.0 2.0
FunctionalObjectProperty 1 0.222222 0.666667 0.0 0.0 0.0 0.0 2.0
InverseFunctionalObjectProperty 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
Rule 1 2.555556 7.666667 0.0 0.0 0.0 0.0 23.0
DifferentIndividuals 1 0.222222 0.666667 0.0 0.0 0.0 0.0 2.0
SubDataPropertyOf 1 1.666667 5.000000 0.0 0.0 0.0 0.0 15.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 9 43753.000000 50670.678555 513.0 6376.0 17281.0 70856.0 149380.0
ObjectIntersectionOf 8 4029.111111 5780.203509 0.0 23.0 760.0 7754.0 16711.0
ObjectSomeValuesFrom 8 8215.777778 10242.782932 0.0 116.0 3257.0 18663.0 25091.0
ObjectUnionOf 5 9.444444 15.701203 0.0 0.0 1.0 14.0 48.0
DataSomeValuesFrom 2 0.333333 0.707107 0.0 0.0 0.0 0.0 2.0
ObjectAllValuesFrom 2 1.222222 2.438123 0.0 0.0 0.0 0.0 6.0
ObjectExactCardinality 2 0.444444 1.013794 0.0 0.0 0.0 0.0 3.0
DataHasValue 1 0.444444 1.333333 0.0 0.0 0.0 0.0 4.0
ObjectComplementOf 1 0.222222 0.666667 0.0 0.0 0.0 0.0 2.0
ObjectHasSelf 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
DataExactCardinality 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
ObjectOneOf 1 0.555556 1.666667 0.0 0.0 0.0 0.0 5.0
ObjectHasValue 1 1683.111111 5049.333333 0.0 0.0 0.0 0.0 15148.0

OBO Score (Experimental)

ontology score score_dash score_impact
2 hp 0.613 0.867 0.444
3 maxo 0.486 0.882 0.222
4 mondo 0.446 0.949 0.111
0 ecto 0.431 0.911 0.111
6 oba 0.422 0.889 0.111
8 vbo 0.356 0.889 0.000
5 monochrom 0.320 0.800 0.000
1 geno 0.291 0.727 0.000
7 sepio 0.187 0.467 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 9.0 0.394667 0.123317 0.187 0.32 0.422 0.446 0.613
score_dash 9.0 0.820111 0.147544 0.467 0.80 0.882 0.889 0.949
score_impact 9.0 0.111000 0.146839 0.000 0.00 0.111 0.111 0.444

OBO dependency graph